Cloned/vendored GitHub research repos, wrapped with a Flask frontend on top of the original code.
He et al. 2020 (Nature Biomed Eng) — predicts spatial gene expression from H&E slides. Upload a slide, get a 250-gene expression map across the tissue.
Hong et al. 2021 (Cell Rep Med) — multi-resolution InceptionResNet predicting endometrial cancer subtype, molecular subtype, and gene mutations from H&E. Workflow writeup + source browser; TF1.13/Keras2.3-era repo, code-browsing only.
Clifton et al. 2023 (Nat Commun) — diffeomorphic metric mapping for aligning spatial transcriptomics data. Runs the real vendored LDDMM registration on bundled Visium-capture-to-Visium-capture pairs, with before/after overlays and downloadable registered points.
Emery et al. 2025 (Adv. Sci.) — relates HD-MEA electrophysiology to 10x Visium spatial transcriptomics on the same mouse hippocampal slices. Runs the authors' own official Zenodo demo dataset (real spaceranger capture, real BrainWave-processed recording) through the vendored spatial-alignment and gene-expression code, essentially unmodified.