Remote ARC
/
ST-Net
/
Infer ST Map
He et al. Nature Biomed. Eng. 2020 ↗
DOI
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Model
No trained checkpoint found. Train the model first from the
setup page
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Checkpoint
densenet121_224/checkpoint_20.pt
scc_densenet121/checkpoint_6.pt
scc_densenet121_loocv/P10_checkpoints/epoch_50.pt
scc_densenet121_loocv/P10_model.pt
scc_densenet121_loocv/P2_checkpoints/epoch_50.pt
scc_densenet121_loocv/P2_model.pt
scc_densenet121_loocv/P5_checkpoints/epoch_48.pt
scc_densenet121_loocv/P5_checkpoints/epoch_50.pt
scc_densenet121_loocv/P5_model.pt
scc_densenet121_loocv/P9_cv/cv_0_checkpoints/epoch_39.pt
Architecture
DenseNet-121
ResNet-50
ResNet-18
VGG-11
Stride (px)
Default: window/2
Batch size
Skip background patches
Device
Auto (GPU if available)
GPU (CUDA)
CPU
Upload & Run Inference
Gene
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ST-Net will predict spatial gene expression
from morphological features of your H&E slide
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Predicted expression
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log(1 + count)